Ngs Tool Analysis For Snp&Indel Calling Of Pooling Data

What are the best and most used analysis tool actually, for SNP and indel calling of pooled data?

I'm using GATK & Freebayes that have specified options for data in pool.

Now I have found CRISP.

Are there others and good tool that I ignore?

Thanks!

snp indel ngs

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updated 3.1 years ago by Ram

• written 13.2 years ago by marcodpc •

i think that may help Which are the best collections of bioinformatics tools for NGS analysis and sequence files management?

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written 13.2 years ago by Medhat

1 answer

I have had good luck with SNVer. I haven't benchmarked it or compared it to other tools, but I have found several GWAS candidates with it. You might also be interested in PoPoolation.

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written 13.2 years ago by Zev.Kronenberg

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