Weighted Graph Matching In Bioinformatics
As we know that many problem in bioinformatics can be formulate into weighted graph matching problem.
For example in this paper the author mentioned that alignment of the PPI network is actually a weighted graph matching problem, which the weight of edges are the experimental evidence of the pair of proteins.
Yet in most of the database like BioGrid and Uniport I cant find any values like "confidence score" of specific interaction.
I would like to ask:
i) Where can I find such "confidence score" of interaction?
ii) Is there any biological network other than PPI network involve weighted graph matching?
Thanks :)
1 answer
Log in to answer this question.
More posts like this
-
Problem in generating interactions graphs through python script
written by anasjamshed
-
Query regarding Differentially Expressed Genes Network analysis.
written by Saransh •
-
Regarding settings on STRING db for PPI
written by NS •
-
Integrate several layers of biological information to build a biological network
written by lessismore
-
specify a root in igraph minimum-spanning-tree
written by mk
-
strange behavior in PPI data of string-db
written by aslan.mehrabi •
-
Are There Any Differences Between Human Protein-Protein Interaction And Mouse Protien-Protien Inter…
written by michaelchen333333 •
-
How To Automatically Convert Ppi Subnetwork Into A Pathway?
written by Diwan
-
Is Search Of Protein–Ligand Docking A Labeled Graph Matching Problem?
written by rein07 •
-
Web-Based Visualization Tools For Protein Interaction Networks
written by giolefpatceid •
have you checked this? http://string-db.org/
I haven't try this. Thanks but I still want to know is there other case that can applied weighted graph matching.
You should open a separate conversation for each question you have. Otherwise, it will be difficult for people to answer you properly.