Many thanks Pierre and Ian. Once I installed g++ as Pierre suggested, I got another error on running make 'cannot find zlib.h'. This was fixed by running sudo apt-get install zlib1g-dev. Perhaps what Ian has suggested might have been a short-cut to this. In any case, I an now able to use the vcftools executable, so many thanks all!
Building Vcftools Executable Part 2!
I want to create the vcftools executable. I don't have a linux/unix system myself, so based on advice I got on this forum, I installed Ubuntu 10.10 (Maverick Meerkat) on virtualbox on my Windows XP machine. On running make, as the VCFtools documentation advises, I get the following message:
nasir@nasir-VirtualBox:~/Downloads/vcftools_0.1.4a$ make
make[1]: Entering directory `/home/nasir/Downloads/vcftools_0.1.4a/cpp'
g++ -O2 -Wall -Wextra vcftools.cpp vcf_file.cpp vcf_entry.cpp vcf_entry_getters.cpp vcf_entry_setters.cpp vcf_file_filters.cpp vcf_file_output.cpp vcf_file_format_convert.cpp vcf_file_diff.cpp parameters.cpp output_log.cpp -o vcftools -lz
make[1]: g++: Command not found
make[1]: * [vcftools] Error 127
make[1]: Leaving directory `/home/nasir/Downloads/vcftools_0.1.4a/cpp'
cd: 2: can't cd to perl
make: * [install] Error 2
What's going wrong? I would be very grateful for advice as I am, as yet, not familiar enough with linux to figure it out exactly.
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iansealy •
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Nasir •
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Nasir •
2 answers
You'll probably find that you're not just missing the g++ package, so the easiest way to install all the relevant packages on Ubuntu (and Debian) is to do:
sudo apt-get build-essential
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iansealy •
Hi Nasir now i have just installed ubuntu from a vitualbox on my windows 7, so i want to instal the VCFTOOLS what is the first thing i need to do because i am a bit confused. thanks
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nwaforcharles •
g++: Command not found
means that you're missing the GNU compiler for C++ . It has not been installed on your machine or it is missing in your path.
you can use either yum or apt-get to install g++ (it depends of your linux distro).
For apt-get, the command should be
apt-get install g++.
(you must be root with an internet connection)
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Pierre Lindenbaum
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