Programming Ramachandran Plot

How do I program for Ramachandran plot in Java. Is there any module available in Biojava ? Please help

java biojava

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updated 13.3 years ago by andreas.prlic

• written 13.3 years ago by potassiumiodide0990

what's your input ?

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written 13.3 years ago by Pierre Lindenbaum

a PDB file would be my input

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written 13.3 years ago by potassiumiodide0990

2 answers

I'm not aware of a BioJava function but this page lists a few online tools, including RAMPAGE. The author also gives a great tutorial on drawing a Ramachandran plot in R.

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written 13.3 years ago by Ben

You can calculate Phi and Psi angles using BioJava and then plot them using your own plotting code.

• 180 views • link

written 13.3 years ago by andreas.prlic

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