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Problem Using The Cosmic Biomart -> Usemart("Cosmicmart") Produces Error

I'm trying to access the COSMIC biomaRt for the first time. I have accessed Ensembl Genes this way in the past but never COSMIC. When I try to select it as the mart to query I get the following error:

library("biomaRt")
cosmic=useMart("CosmicMart")
Error in read.table(con, sep = "\t", header = FALSE, quote = "", comment.char = "",  :  no lines available in input

Any idea what I'm doing wrong here?

r biomart

I get the same error from here (Barcelona). It seems an error of the server. You should contact the COSMIC user service, and ask them to check it.

Contacted them, many thanks for trying the code :)

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