Hi, I want to generate a consensus sequence of a large number of amino acid sequences using python. For example, If there are three different …

I have recently come across the term protein sequence identity, which is defined as the ratio between the number of matches between two amino acid …

Hello Everyone, I have a multi sample vcf file of a particular gene for 1000 individuals . I annotated it with snpeFF. I want to …

#!/usr/bin/env python3 (conserved amino acid position) from Bio import AlignIO import sys #data = np.genfromtxt("/home/tina/bin/MDR_aminoglycoside.csv", delimiter=",") aln = "/home/tina/cd-hit/core_header_WP_000209090.1/seqret_out_WP_000209090.1.aln" print("Alignment length %i" % alignment.get_alignment_length()) #print …

Hi Thank you so much in advance. I hope to know if there is any tool that identifies proteins that contain certain amino acid sequence. …

Hi there, I have my protein sequences aligned and I want to identify the most conserved amino acid in a given position and its conservation …

Hi, I am very new to shell scripting and am hoping someone could help me with the below problem I encountered in my bachelor's project. …

<p>Hi All,</p> <p>How can I map protein amino acid residue position/boundaries ( example: for a protein residue boundary ILe144-Lys213) to its actual genomic base pair …

<p>Hi to all, When trying to build a homology modeling for a protein with high sequence identity (&gt;80%)with PDB structure using SwissModel with "alignment mode" …

<p>Hello,</p> <p>I have a file with protein sequences for which I would like to know the <strong>similarity score</strong> of the <strong>multiple sequence alignment</strong>.</p> <p>I have …