How To Format Somatic Mutations For Sift Annotation
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@shilpy: be clear with your question. what you want to achieve give example input and potential output... so that other can give you suggestions
here are some input formats: http://provean.jcvi.org/help.php#genome_input_format ; http://sift.jcvi.org/www/chr_coords_example.html ..few more here http://sift.jcvi.org/
INPUT: The script should take as input 2 vcf files (1 from normal and 1 from tumor sample) and an output file name. The script will read in the filtered vcf files generated above.