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Generating Artificial Sequences And Implant Motifs

Hi I am working on a project where I need to generate some artificial sequence and implant some motifs to do some algorithm benchmarking.How can I do this using PWM based tools.Links would be helpful. Thanks much Satwik

motif
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written by sathipkr • sathipkr

can you please explain what is PWM? Position Weighted Matrix?

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written by Giovanni M Dall'Olio Giovanni M Dall'Olio

2 answers

You can generate sample sequence using the following tool from the public server.

http://galaxy.raetschlab.org/tool_runner?tool_id=motifgen-fasta_1

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written by vipin.ts • vipin.ts

Hi Giovanni sorry for the not expanding it.Yes I meant a position weighted matrix. Hi Vipin thanks a lot for this useful link.

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written by sathipkr • sathipkr

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