How To Choose Representative Sample From A Cluster?
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This has been asked some time ago: Clustering Of Protein Sequences
The post is regarding sequences. I would like to edit my question before closing the question.
My input is a distance matrix and i have clustered a set of structures based on RMSD value. Now i want to calculate the representative structure out of all structures after doing hierarchical clustering... Is it possible or should i proceed doing k means ??
The way is exactly the same, the other question wasn't specific to sequences even though they are mentioned. You don't need to use kmeans, but you can.