Tools Of Estimating Linkage Disequilibrium/Recombination Rate And Rr Hotspot Based On Ngs Population Data

I would like to hear your advice on/recommendation of a tools of estimating Linkage Disequilibrium/Recombination Rate and RR hot-spot based on NGS population data.

For me, I have gotten known with LDhat. But, I have implemented in my study. I wonder if there are robust but more easy-for-use tools like LDhat. Also, I would like to hear your experience of using those ones or good guides for them.

Thanks in advance.

linkage recombination

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updated 15.4 years ago by 2184687-1231-83-

• written 15.4 years ago by Jianfengmao •

1 answer

Shameless plug, if you have haplotyped data in the hapmap genotype format, you could try http://www.ub.edu/softevol/variscan

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updated 6.9 years ago by Ram

• written 15.3 years ago by 2184687-1231-83-

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