Is There A Way To Recalibrate Genotype Calls Made Via Samtools/Bcftools?
Hi,
I've read that genotype calls produced by bcftools are 'inaccurate' as mentioned in Why does samtools/bcftools give incorrect genotypes and innacurate quality scores?.
Is there a tool to go through and 'recalibrate' using the PL information?
Cheers, Dan.
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This could be done with a simple Perl script I guess...