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Tool: Deindexer - A Standalone Demultiplexing Tool For Illumina Platform

deindexer

A Standalone Demultiplexing Tool for Illumina Platform

Features

  1. No need to edit SampleSheet.csv files
  2. Support your own barcode library
  3. Support many mismatches on barcode[s] (Currently Illumina only allows 1 mismatch)
  4. Easy to use: support single barcode to dual barcode or multiple barcodes protocol [even it has not exist yet]
  5. Fast: est. 4 million reads per minute. One hiseq lane dual indexes takes 30 mins. One non-hiseq lane takes 4 min or less using 400 barcodes.
  6. Grouping output files: customize the output layout within the config file

Project location: https://github.com/ws6/deindexer

illumina
• 7,807 views • link
updated by Ram Ram • written by jingtao09 • jingtao09

The sentence "IF YOU ARE BORED ABOUT USING CASAVA's DEINDEXING PROCEDURE, THEN LOOK AT THIS" is inappropriate when describing the reasons for using a tool. I think I understand the sentiment but expressing it with all caps (that means shouting) and broken english makes for a terrible first impression. I would recommend that you reformulate it.

• 0 views • link
written by Istvan Albert Istvan Albert

Does it accept variable-length barcodes?

• 0 views • link
written by Yannick Wurm Yannick Wurm

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