How To Get An Annotation File That Annotates All The Go Terms In A Different File
I downloaded a Full Gene Ontology Term file from the following link: http://www.geneontology.org/GO.downloads.ontology.shtml
The file that i downloaded is the one in the first row. It has around 30,000 GO Terms. My question is: Where can I find another file that has the gene annotations of all the GO Terms in the first file?
• 4,193 views
•
link
updated
by
Khader Shameer
•
written
by
zitona_tracker •
•
written
by
zitona_tracker •
1 answer
I think the zitona_tracker is looking for Gene Ontology Annotation files in GAF format. Annotation data is available via GOA-EBI or Gene Ontology annotations repository
• 0 views
•
link
written
by
Khader Shameer
Log in to answer this question.
More posts like this
-
Make a specific format gene ontology file?
written by db950999 •
-
OMA error - download from gene ontology not working 404
written by nc52 •
-
Where to find *full* GO gene annotation file?
written by iamjli •
-
Gene Ontology: Disjoint Terms
written by Lorrit •
-
Propagating Gene Ontology labels to ancestors
written by kandoigaurav
-
How To Define A Protein As Kinase Protein?
written by Nims •
-
Gene Ontology -- Getting Complete Gene And Gene Ontology Term Associations
written by jsporter
-
Testing Significance Of Go Term Frequency In Biomedical Literature
written by user1409015 •
-
Obtaining "Gene-Association" File For Go Term Analysis
written by Arun
-
Gene Ontology Terms For A Set Of Pdb Chains
written by Reyhaneh
cross posted on SO: http://stackoverflow.com/questions/14040316
and I don't understand your question. What is "the file I downloaded is the one in the first row" ?
If you are looking for GO terms that correspond to gene annotations, then you are going to have to specify what organism you are working with. Not all organisms have pre-generated GO annotations. You will have to use various software (blast2go, interproscan) to generate the GO terms for your gene-set.