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How To Identify The Protein Domains Of A Specific Protein?

Hi How can I find which kind of protein domains exist in my protein and have a good image as out put?I mean, have a picture which shows domains in a specific protein?Thanks

protein
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updated by Biostar Biostar • written by Omid Omid

3 answers

I've used: SCOP: http://scop.mrc-lmb.cam.ac.uk/scop/

CATH: http://www.cathdb.info/

Interpro: http://www.ebi.ac.uk/interpro/

SMART: http://smart.embl-heidelberg.de/

I remember finding SMART the prettiest.

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written by KCC KCC

Expasy have a cool tool for creating the domain diagrams: http://prosite.expasy.org/mydomains/ Perhaps after getting the data from http://pfam.sanger.ac.uk

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written by Niallhaslam Niallhaslam

Is there any tutorial to use pfam + prosite together?

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written by Shicheng Guo Shicheng Guo

NCBI Search for Conserved Domains will do the job: http://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi

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written by Pavel Senin Pavel Senin

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