More posts like this
-
DALI server
written by N •After running the structural alignment of 17 protein sequences I got some results but I'm struggling to analyze the results. Like finding the conserved domains …
-
Conserved domains in multiple sequence alignment
written by siuDear all, I have few protein sequences (belongs to a protein family) from different algae which I have aligned using mafft. I want to know …
-
Retrieving domain loci
written by jcthomas000 •I've got a list of 200 Ensembl gene IDs and I want to get the start and stop nucleotides for known conserved domains. Going to …
-
Different Pfam and SMART protein domains..
written by kajaenilsen •Hi! I'm using the Pfam and SMART databases to identify protein domains in a few protein sequences (known sequences). For EGR1 and EGR2 i get …
-
protein domain software
written by elmira b •Hi, Would you please recommend me a good software for searching domains in a protein or coding nucleotide sequence? (except NCBI conserved domain search). Your …
-
How to split protein tandem domains fasta sequnces to multiple single sequences?
written by astrozheng •I have a set of data containing over 3K fasta sequences of a type of protein domains. In some sequences there might be 2 or …
-
Matching genomic positions to protein funtional/sctructural domains
written by luisantome •Hi there, I wish to annotate genomic variants with some kind of information related to protein conserved domains and (specially) functional domains to predict their …
-
putative conserved domain in introns
written by ravihansa82I am currently working on set of long intron sequences..once I put them in to NCBI CD-search tool(CDD) those intron sequences showed that such sequences …
-
How To Identify The Protein Domains Of A Specific Protein?
written by Omid<p>Hi How can I find which kind of protein domains exist in my protein and have a good image as out put?I mean, have a …
-
Extract Domain Sequences From Multiple Sequences
written by Palu •<p>Hi, I have 100 protein sequences with some conserved domains. I want to extract the domain sequences in a go. is it possible. Although CDD …
This sounds like a homework/assignment question. If that's the case, it will be closed as off-topic unless you first show us your efforts to tackle the questions. We will be happy to steer you in the right direction after that.
Your question is too general. What organism you are interested in?
Prokaryotic or eykaryotic one?
There are a lot of posts in Biostars about protein domains.
Just go to the left-hand upper corner, click
'LATEST' and type your question (conserved domains in a protein sequence)
to an empty string in the middle of the page. But add some details. I've found several links,
but I am not sure this will help you a lot - they are also general.
Also look at the right panel - there may be very recent threads as well.
Uniprot – is a good sourse:
Conserved Domain Batch Retrieval
pfam and hmm databse of PFAM
protein domain software
PROSITE and ConPlex
A: Tool For Evolutionary Conservation Of Protein Folds
Domain prediction
How can find conserved domains of protein's sequence offline?
domains from multiple sequences
Extract Domain Sequences From Multiple Sequences
Protein domain visualization tools
Looking for a protein domain visualisation tool