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Bed For Agilent Sureselect All Exon Kits ?

My lab has sequenced an exome using the "Agilent SureSelect All Exon Kits" ( http://www.genomics.agilent.com/CollectionSubpage.aspx?PageType=Product&SubPageType=ProductDetail&PageID=3041 )

allez, une petite image pour faire joli

Does anyone knows where I can find a BED describing the captured regions ?

P.

bed exome agilent next-gen
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updated by javiflaja • javiflaja • written by Pierre Lindenbaum Pierre Lindenbaum

4 answers

Ok https://earray.chem.agilent.com/suredesign/index.htm was the right place to find the BED. I was able to log-in today

Thank you all.

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written by Pierre Lindenbaum Pierre Lindenbaum

I can confirm that, 5 years later, this solution still works. I had to create an account at suredesign, then click "find designs", then click "agilent catalog", then you get to a list of a bunch of sureselect kits with download links including .bed files.

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written by glocke01 glocke01

Even after 8 years, this solution still works. :)

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written by svp svp

According to this post Human Exome Capture Library Coordinates Download , maybe you can find the information in Agilent's Earray https://earray.chem.agilent.com/earray/

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written by JC JC

I don't have access too, maybe next week I can check with some coworkers who has an account in the EArray.

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written by JC JC

They're not on eArray any more, I checked today. If you have an eArray login, that will work for SureDesign

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written by User 59 User 59

They are certainly still there, starting with version 4.0

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written by predeus predeus

June 2023, Solution is still applicable. https://earray.chem.agilent.com/suredesign/index.htm

Find designs tab - DNA - select your zip

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written by javiflaja • javiflaja

I confirm that the answers above do work in 2022 as well.

  1. Go to https://earray.chem.agilent.com/suredesign/search.htm
  2. Login/register.
  3. Go to the "Find Designs" tab and search for the name of your kit.
  4. Download the zip with .BED files for Hg19 or Hg38 respectfully.
  5. Do not forget Bioinformatics is epic!
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written by Момчил • Момчил

Hi,

I can't find the corresponding Hg38 bed file for: SureSelect_All_Exon_50mb_with_annotation_hg19.regularOnly bed file on the login page, would you be able to email it to me if you can find it? Thanks! Amy

HousemanA@cardiff.ac.uk

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written by hello_bioinf • hello_bioinf

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