I want transcription start and end for the gene (hg18/NCBI36). I used UCSC it does not have all the genes i am interested in. Your help will be appreciated.
Thanks!
I want transcription start and end for the gene (hg18/NCBI36). I used UCSC it does not have all the genes i am interested in. Your help will be appreciated.
Thanks!
I dont think, that you are pointing to gene name, they might be identifiers. Anyways, make a text file for your genes, one per line.
Go to TableBrowser and select
clade-> Mammal,
genome-> Human,
group-> Gene and Gene prediction Tracks,
track->RefSeq Genes,
table->refgene
This essentially will contain all the co-ordinates of your genes of interest, column 5,6 are txStart and txEnd.
Cheers
Thank you very much for your help !!
After uploading the GB_ACC list i am getting a message saying:
•Note: 6153 of the 25847 given identifiers (e.g. AF520801) have no match in table refGene, field name or in alias table refLink, field name. Try the "describe table schema" button for more information about the table and field.
How should i describe table schema.
Thanks!
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Might want to read that title again. Hint: transpiration is how plants move water.
Excuse me :)))
i just have list of gene symbols
Sounds really funny, which genes you have are not there. If you could post the geneNames, fetching would be really easy.