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Clustering Softwares For Clustering Genes Expression Or Drugs Activity

Hi all

I want to cluster genes on the basis of their expression values. Can someone suggest me good "CLUSTERING SOFTWARES" (generic or specialised); where I can give input file of correlation matrix of expression values of genes in different samples and get the clusters based upon correlation values of gene expression (preferrably in the form of a denderogram/tree).

Thanks in advance.

clustering software gene expression
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updated by theobroma22 theobroma22 • written by monukmr98 monukmr98

2 answers

I think Cluster3 combined with JavaTreeView do exactly what you want. Read the manual, they are pretty powerful and fast in handling huge matrices.

Cheers

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written by Sukhi Singh Sukhi Singh

thanks sukhdeep for help

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written by monukmr98 monukmr98

Mfuzz Bioconductor package.

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written by theobroma22 theobroma22

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