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What Is The Best Way To Get Gene Expression Depending On The Cell Type ?

Hello all,

I have a big gene list with genes not necessarily expressed in all cell types, so let's say among the list I have 100 expressed in Embryonic Cell line. I am using standard ENCODE cell type.

Is there a rapid manner to classify these genes depending on the cell type ? Any accessible data from UCSC through programming or through tracks ?

Thanks

Rad

gene expression
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updated by Pierre Lindenbaum Pierre Lindenbaum • written by Rad Rad

You can take a look at the GEOquery package in bioconductor if you are an R user.

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written by Sean Davis Sean Davis

1 answer

I've asked a related question before:

"Geo Profiles": Downloading profile data.

please, close your question if you feel it is a duplicate.

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written by Pierre Lindenbaum Pierre Lindenbaum

Great, Thanks Pierre

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written by Rad Rad

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