Perl Script To Check Top Blast Hits
I search for a perl script to check if the top BLAST hits to a query contained a full scientific binomial, i.e. for see if the next best hit has a complete scientific name with taxonomy, and to sorted it. Does anyone has already work with this kind of tool ? Thanks
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Janake
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gui0me.nicolas •
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gui0me.nicolas •
2 answers
You could do it easily with biopython. http://biopython.org/DIST/docs/tutorial/Tutorial.html#htoc83
I don't know if anyone did it in perl...
I agree with Biojl and biopython is a good solution. But if you want a perl script, you can find a one in the following URL. I haven't used it, but this seems a good start.
http://www.oardc.ohio-state.edu/tomato/HCS806/blast_parsing_pl.txt
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