Hi guys,
I wonder if there're any up-to date publicly available genomes of bacteria, I could use as an input for Blast/Blat (fasta/2bit format) search. If so, would you send me links? I'm aware of database '16S ribosomal RNA sequences (Bacteria and Archaea)', however it's coverage is rather low. I appreciate your experiences.
EDIT: thank you guys, you've helped me a lot. It's a shame, that as an answer just one can be picked :)
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written
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Lukas Pravda
5 answers
You can get a lot from Human Microbiome Project.
I have a good blog post on this topic:
http://thegenomefactory.blogspot.com.au/2012/07/navigating-microbial-genomes-on-ncbi.html
You can get a bunch of genomes from http://www.ncbi.nlm.nih.gov/genomes/MICROBES/microbial_taxtree.html
thank you guys, you've helped me a lot. It's a shame, that as an answer just one can be picked :)
You should add comments like this as "comments" rather than "answer".
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