Artemis Reads The Snps But Not The Indel Vcf File
I have got raw SNPs and INDELs in separate vcf files using GATK. I tried to view that on Artemis after uploading my embl and fasta reference file. Artemis managed to read the raw SNPs file with nice graphics. But when I upload INDEL vcf file, it can't read though the Artemis log file says vcf file is visible. Even when I filter my raw SNPs vcf file and get a new vcf and then try to read that on Artemis, it can't read anymore.
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Closed: duplicate of http://www.biostars.org/post/show/51206/artemis-cant-read-my-vcf-file/
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