Summarizing list of Genbank Assembly Accessions
I have a list of genbank accession ID numbers resulting from an experiment. I'm interested in summarizing the strains to which they belong, eg by grouping them at a genus or species level. Does anyone know of a tool me to do this? Initially I thought I could use something like phyloT (https://phylot.biobyte.de), but my IDs are in the wrong format. Any suggestions as to tools I might look into or search terms I might use to explore further myself would be greatly appreciated.
Examples of the sort of Genbank Assembly Accessions I have: GCA_013300845.1 GCA_014847545.1 GCA_004167785.1
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Using EntrezDirect:
$ more id
GCA_013300845.1
GCA_014847545.1
GCA_004167785.1
$ epost -db assembly -format acc -input id | esummary | xtract -pattern DocumentSummary -element Genbank,Organism,Sub_type,Sub_value
GCA_014847545.1 Ligilactobacillus ruminis (firmicutes)
GCA_013300845.1 Blautia glucerasea (firmicutes) strain MSK.20.42
GCA_004167785.1 Bacteroides ovatus (CFB group bacteria) strain am_0171
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