Identifiying SNP frequencies for very specific subpopulations on dbSNP
For a specific area on the human genome I have to identify if/which SNPs differ between European and Japanese individuals.
I already identified the SNPs along with the identifiers on dbSNP.
Is there a good way to extract the SNPs frequencies exactly for groups "European" and "Japanese". How do I identify only SNPs from Japanese individuals?
EDIT: ANYONE an idea where I can get the raw data for this? Or does this not exist?
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Obtaining European allele frequencies for TopMed SNPs
written by 4galaxy77
-
individual-level allele frequencies
written by anamaria
-
How to begin with Fst calculation of SNPs from two different populations
written by doodle •
-
how to query dbsnp locally
written by tariktj •
-
How to identify the ancestral population to which an individual belongs knowing its allele frequenc…
written by cyril-cros
-
Significance of genotype frequency in SNP study
written by attiafatima •
-
Fasta with Common SNPs masked
written by robert •
-
How To Get Non-Snp Sites Or Invariant Sites Based On 1000 Genomes Project
written by Gangcai
-
Tool: Annovar: Functional Annotation Of Genetic Variants From High-Throughput Sequencing Data
written by Istvan Albert
-
Suggestions : Developing A Pipe-Line For Scanning Genomic Regions To Identify Known Genomic Elements
written by Khader Shameer
Have you looked at VEP annotation tool? It has allele frequencies by super-populations, I am not sure if you can just find Japanese.
No, that does not help. but thanks!