Help me solve this error in bigSCale2
I'm getting the following error while running bigSCale with a dataset of 50 cells and 6000 genes. How to solve this?
Error in .check_tsne_params(nrow(X), dims = dims, perplexity = perplexity, :
perplexity is too large for the number of samples.
• 1,233 views
•
link
updated
by
lakhujanivijay
•
written
by
dhanesh01998 •
•
written
by
dhanesh01998 •
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
How should I solve the error: comparison (3) is possible only for atomic and list types
written by paria •
-
PYSCENIC - full garbage collection
written by GiuliaAC •
-
How to choose the number of PCs for a large Seurat Object
written by parvathi.sudha •
-
Cross-specie Integration Using Seurat
written by manishaB •
-
Deseq error : ncol(countData) == nrow(colData) is not TRUE
written by robert.murphy •
-
Load Count Matrix
written by Bios •
-
HTSeq error while counting reads
written by makwana.kd •
-
ERR: Perplexity is too large in Reducedimension step in Monocle
written by John
-
goodSamplesGenesMS non-numeric variable in data frame multiExpr
written by madzayasodara •
-
Memory Allocation for VarScan
written by Charles Warden
dhanesh01998
Please modify the post title to something informative. "Help me solve this error in bigSCale2" does not help understand the issue.
Elaborate on what are you trying to achieve, what was the command you ran.