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Bigbedsummary Usage

Hello, I am having trouble with runing biBedSummary. Usage is: bigBedSummary .bb file Chrom start end dataPoints I input bigBedSummary my.bb but Chrom1 start= end=* dataPoints=1 (default) I get back the message that start, end and dataPoints are not valid arguments. Any help? Thanks.

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written by GPR GPR

2 answers

for chr1:1-100000, try

bigBedSummary file.bb chr1 1  100000 1
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written by Pierre Lindenbaum Pierre Lindenbaum

Thanks! it worked now.

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written by GPR GPR

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