This is a test version of Biostars. For the public version, visit https://www.biostars.org.
How to get `assembly-stats` command?

I did sudo apt-get install sga for assembly-stats , after installation it typed assembly-stats: command not found . What should I do to get assembly-stats ? Ps. I run Ubuntu app on Windows using the new Windows Subsystem for Linux that comes with Windows 10.

ubuntu stats assembly-stats assembly sequencing

without knowing the details:

you need to either add this assembly-stats to your $PATH or call it using the whole path to the location where you installed it

Usually neither of those is necessary when installing via apt-get. I think it is more likely that sourcing the .rc-file plus rehash is needed. Or simply open a new terminal and try the same command again.

0 answers

No answers yet.

Log in to answer this question.