Hello, I am doing alternative exon usage analysis using DEXSeq and following this documentation DEXSeq Documentation
After testing the result, how do I save me results as a .csv file ?
dxd <- estimateDispersions( dxd ) dxd <- testForDEU( dxd dxr <- DEXSeqResults( dxd )
Following the documentation, my code worked, but I do not know how to save the result as a .csv file. I also wanna obtain log2fc, how can I do it ? I searched a lot, but could not find an answer to my question. I appreciate your kind help.
Thank you very much for helping.
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written
by
Aynur •
1 answer
I ran results_df <- data.frame( groupID = dxr1$groupID, featureID = dxr1$featureID, log2FC = dxr1$log2fold_knockdown_control, pvalue = dxr1$pvalue, padj = dxr1$padj )
write.csv(results_df, file = "dexseq_results.csv", row.names = FALSE), then I got my file, which included log2fc data.
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