getting fastq ID with SNPs
Hi! I was wondering if anyone knows how to bioinformatically get fastqID with mutations? I want to extract the info that was displayed in Genome browser, fastqID that has SNP compared to reference.
Thanks for the help!
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Do you want to do that programmatically or just for a few ID's?
Programmatically. I just need the readname and the nucleotide that it is calling at a particular coordinate.