VCF to bcf conversion; vcf file header missing
Could you please suggest me how can I add contig header into the vcf file
$ vcftools --vcf ZZ_ZW_BiSnps.recode.vcf --recode-bcf --contigs header.txt
VCFtools - 0.1.16
(C) Adam Auton and Anthony Marcketta 2009
Parameters as interpreted:
--vcf ZZ_ZW_BiSnps.recode.vcf
--contigs header.txt
--recode-bcf
After filtering, kept 69 out of 69 Individuals
Outputting BCF file...
Error: Could not open `contigs file: header.txt`
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safiq713 •
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header.txt is not in your current directory.