This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Conversion of GFF3 file to ptt format

Hello there,

There is a way to convert a GFF3 file to ptt format? Are there any R packages or similar?

Thanks everyone.

rna-seq alignment r sequencing next-gen
• 2,449 views • link
written by qstefano • qstefano

if you have a possibility to obtain gbk or gb (not gff3), then use the following script: https://github.com/sgivan/gb2ptt or so: perl GBKtoPTT.pl < [yourgbkfile.gbk] > [yourdesiredoutputfile.ptt]

• 0 views • link
written by mewgia • mewgia

I've read something about that. There's a way to download automatically ptt file by acession ID? Or eventually gbk?

• 0 views • link
written by qstefano • qstefano

actually i don't know, but when i had the same problem, i downloaded the genome in .gbk and converted it to .ptt using the script i mentioned.

• 0 views • link
written by mewgia • mewgia

I've noticed that using .gbff (modern version of gbk) the script works anyway.

• 0 views • link
written by qstefano • qstefano

0 answers

No answers yet.

Log in to answer this question.

More posts like this