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Conversion of GFF3 file to ptt format

Hello there,

There is a way to convert a GFF3 file to ptt format? Are there any R packages or similar?

Thanks everyone.

rna-seq alignment r sequencing next-gen
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written by qstefano 2

if you have a possibility to obtain gbk or gb (not gff3), then use the following script: https://github.com/sgivan/gb2ptt or so: perl GBKtoPTT.pl < [yourgbkfile.gbk] > [yourdesiredoutputfile.ptt]

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written by mewgia 0

I've read something about that. There's a way to download automatically ptt file by acession ID? Or eventually gbk?

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written by qstefano 2

actually i don't know, but when i had the same problem, i downloaded the genome in .gbk and converted it to .ptt using the script i mentioned.

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written by mewgia 0

I've noticed that using .gbff (modern version of gbk) the script works anyway.

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written by qstefano 2

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