<p>I have some whole genome sequenced data with coverage ~6x and some whole exome sequenced data with coverage ~60x. The sequencing platforms are the same …
<p>Question about exon-seq data analysis for mutation detection.</p> <p>I have some exon-seq data and DNA-Seq data from the same samples. The matched normal data is …
<p>Hi all,</p> <p>I searched GEO and didn't find the RNASeq data from human adult pancreas and stomach tissues (not cell lines). Anyone can help looking …
<p>Hi,</p> <p>While I use annovar to annotate the exome seq data, I get two files annovar.variant and annovar.exonic_variant.</p> <p>My question is If exome seq only …
<p>HI,</p> <p>In 1000genomes data, I found the fastq of exome seq is like this:</p> <p>@341035 0<em>PE</em>BC<em>SOLiDPEP20110531001</em>B<em>SOLiDPEP20110531001</em>B<em>13</em>23_187/1</p> <p>T232102322030210120120010000120000330003.320..03032</p> <p>+</p> <p>!'(%%%)%%'%&&&%&%&%%%,)''%&%%%)%.&%%(%.%!&/&!!&()%%</p> <p>I want to ask if this …
<p>Hi All</p> <p>I have done exome sequencing for 6 samples. Now I am calling variations using GATK. I am calling variations for each sample individually …
http://www.1000genomes.org/
why not put this into an answer and with that have the question answered
Good point. I just figured the thread would get closed or deleted. I also don't like to 'answer' without giving an explanation.
Thanks so much. Can you tell me if there have coverage difference between this and TCGA.
TCGA data are not "publicly" available. You can apply via the DCC for access, though.