plink--merge-list output union of snps between merged files?
Trying to merge 2 plink files, Each one has snps that are not in the other.
I want the merged file to have all snps present in wither file, setting calls to missing where appropriate. Is there anyway to do this?
This just seems to take the intersection:
plink --merge-list $merge_list --make-bed --out $merge_plink
Thanks
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Can you clarify why you think that is taking the intersection instead of the union?
I just came here to delete this question, I just goofed and thought it was. Sorry