This is a test version of Biostars. For the public version, visit https://www.biostars.org.
Number of junctions to be inserted on the fly is larger than the limitSjdbInsertNsj=1000000 in STARSolo

I got the following error when tried to map my scrna seq to a concatenated genome via STARSolo in usegalexy.

Fatal LIMIT error: the number of junctions to be inserted on the fly =5416911 is larger than the limitSjdbInsertNsj=1000000
Fatal LIMIT error: the number of junctions to be inserted on the fly =5416911 is larger than the limitSjdbInsertNsj=1000000
SOLUTION: re-run with at least --limitSjdbInsertNsj 5416911

Jan 26 05:12:14 ...... FATAL ERROR, exiting
Detected Common Potential Problems
The tool was executed with one or more duplicate input datasets. This frequently results in tool errors due to problematic input choices.

Does anyone know how can I increase limitSjdbInsertNsj in galaxy environment? Or any solution to get rid of this error?

rna-seq scrna
• 1,618 views • link
updated by Ram Ram • written by mitrafarahmandnejad • mitrafarahmandnejad

0 answers

No answers yet.

Log in to answer this question.

More posts like this