Entering edit mode
3.3 years ago
aa123
•
0
In this vignette (ctrl vs stim), does PCA use the 2000 variable features or use all the genes from the integrated analysis?
https://satijalab.org/seurat/v3.2/immune_alignment.html
Thank you.
Thank you.
Is this because the default assay is “integrated”?
The RunPCA command does not specify using variable features through features=VariableFeatures(object=)).