Error in ChIPQC(samples) : Unable to process. Each bam file must be associated with at most one peakset.
Hi All,
I get this error when I run the ChIPQC package on my data (single sample). The commands are mentioned below:
## Load sample data
samples <- read.csv('meta/samplesheet.csv')
#View(samples)
## Create ChIPQC object
chipObj <- ChIPQC(samples, annotation="hg19")
The samplesheet.csv:
SampleID,Tissue,Factor,Replicate,bamReads,Peaks
SRR,PCa,AR,1,data/bams/SRR.sambamba.sorted.uniquemapped.bam,data/peakcalls/LNCaP_AR_macs2_peaks.narrowPeak
I am not sure what exactly am I doing wrong.
Any help will be much appreciated. Thanks!
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1 answer
Add another sample could solve this problem, which works for me.
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