How to combine HiSeq and MiSeq reads?
Hello, I am trying to use Spades for genome assembly of paired HiSeq and MiSeq reads but I am not getting better coverage when I combine those reads compare to the separate HiSeq assembly. Do you please know what could be the problem?
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zihaladavid •
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What kind of coverage? Not recovering all expected regions of genome?
Is the same library sequenced on both HiSeq and MiSeq? Perhaps it is the library characteristic.