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Merging three assembly results and elimination of duplication

Hello Biostar ! I hope you're doing well i did assembly using 3 type of sequencing , Hiseq Data MIseq Data and mixed (Hiseq Miseq ) , to improve the next results i'm thinking about merging the results of assembly of these three data ( Hiseq contigs , Miseq contigs and Mixed Hiseq Miseq contigs ) but i want to eliminate the duplication in the final file can you please tell me how to eliminate the duplication and if there's any way to be sure that final file ( that contain the results of the three contigs data without duplication ) is better than the previous files .

I hope i m clear Please tell me for any more clarification you want to know Thank you

alignment sequencing assembly assembly
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updated by N15 N15 • written by Bioinfo • Bioinfo

1 answer

Try Mikado - a tool for merging assemblies

https://mikado.readthedocs.io/en/latest/Introduction.html

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written by N15 N15

Thank you for your reply

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written by Bioinfo • Bioinfo

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