whole exome variant filtering
Hello, I need to do whole exome variant analysis from ready vcf.gz files. Only option I know is filtering through Illumina Variant Interpreter
Are there better options for whole exome variant filtering than Variant Interpreter?
Thank you!
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storm1907 •
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Well, in which way do you want to filter? - low read depth?; strand bias?; functionality / pathogenicity [of the variants]?
For ease of use, Ensembl's Variant Effect Predictor may be what you need.
Thanks Hamid
Maybe duplicate of this thread: C: Variant filtration software
You can find a list of tools there.