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Differentially expressed genes selection by several pipelines

Hi!

Due to false positive rate, is it acceptable to use gene sets as DEGs (Differentially expressed genes) that are equally predicted by several pipelines?

Thank you.

rna-seq

I don't see any problem with that. Personally, I like to combine Deseq2 and EdgeR results as a start point. But keep in mind that you may have true calls alone in some pipelines!

Thank you very much! I'll try that!

P.S. Enrichment analysis was improved! Thank you again!

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