UCSC to gene symbol

Hi, I have a list of UCSC IDs in this format inside a txdb object in the TX_NAME column:

TX_NAME
uc001aaa.3

uc001aal.1

uc001aau.3

uc010nxu.2

uc001abp.2

How do I convert them with the org.Hs.eg.db database to gene symbol:

TX_NAME          GENE_SYMBOL
uc001aaa.3        DDX11L1

uc001aal.1         OR4F5

uc001aau.3        LOC100132062

uc010nxu.2        ...

uc001abp.2       ...

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updated 5.7 years ago by Kevin Blighe

• written 5.7 years ago by lorenzinip •

There are many solutions, if you just search for keywords: UCSC to gene symbol

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written 5.7 years ago by Kevin Blighe

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