how to get chromInfo file
Hi,i'm using outrigger to detect AS events. It needs hg38.chrominfo.
Table 'HG38.chromInfo' doesn't exist\n"
So, how can i get this file.
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fuhaolll2 •
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A similar issue has been discussed in the following thread.
https://github.com/YeoLab/outrigger/issues/89
Download the chromInfo file from the following link.
http://hgdownload.cse.ucsc.edu/goldenpath/hg38/database/chromInfo.txt.gz
Thanks! I have tried ,but it dosen't work. Did you have used it before , content in chrominfo should be in especial format?
What does not work? @Arup linked the file directly above (and the link does work).
I can download it, but in the tools it doesn't work
Did you try renaming the file
HG38.chromInfo?Hi, did you solve this issue? I get the same problem "Objekt 'chrominfo_grch38' nicht gefunden" using the scarhrd package in R