update Trinity -> v2.11.0
Hi,
I am working on a project and I need to use Trinity, but whenever try to run Trinity, I am constantly receiving an update message:
** NOTE: Latest version of Trinity is v2.11.0, and can be obtained at: https://github.com/trinityrnaseq/trinityrnaseq/releases
Followed by,
Trinity Trinity-v2.11.0 requires salmon to be installed. Get it here: https://combine-lab.github.io/salmon/ at /usr/local/bin/Trinity line 3973.
I am just unsure how to add this download onto command line and how download salmon.
I am running all my commands on command-line using secure shell as my program.
Any suggestions would be kindly appreciated!
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adampepper313 •
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If you are unsure about how to install programs then follow this guide (just the first part that deals with
conda) to installtrinity: Creating workflows with snakemake and conda .The message that you get at the beginning is just a
NOTEit can be ignored. Your problem is that whoever has installedtrinityon the server that you are using does not have an install of a different program calledsalmonavailable.