This is a test version of Biostars. For the public version, visit https://www.biostars.org.
incompatibility of variant positions between my data and databases

I use annnovar 2018 tool for variant annotations. But there is a problem for frameshift variants. My data has incompatibility with other databases. For example the variant in my data: p.R125fs (rs746835434), but in other databases it is T126fs. Always frameshift variant shows +1 aa position on databases. Bu they have same rsID. How to solve this? Is it about annovar or variant caller or annovar databases?

annovar variantannotation next-gen sequence snp

0 answers

No answers yet.

Log in to answer this question.