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Gff3 Format - Human Genome

Hi all,

Does exist a place where I can easily download a GFF3 file of hg19 human annotations ?

Cheers,

T.

human format gff annotation
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updated by Travis Travis • written by toni toni

Ensembl have GTF (which is GFF 2.5 or something). But I want this too.

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written by Casbon • Casbon

3 answers

Check this url

Data type:
gff3
Build:
hg19
• 3 views • link
updated by Ram Ram • written by Alex Alex

That's a really nice link, thanks.

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written by Gww Gww

Absolutely, that's a great link. Very helpful ! thank you very much.

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written by toni toni

Is there a spec on what is in and what is out feature wise? There are UTRs which must be inferred by the translation, right?

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written by Casbon • Casbon

It should be noted that the files linked in the top answer are Ensembl annotations and the chromosome identifiers have NOT been altered to refer to the UCSC hg19 genome.

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written by Travis Travis

You can also get all Ensembl data including gene annotation GTFs (which you can convert to GFF3) from here: http://www.ensembl.org/info/data/ftp/index.html.
Through their BioMart you can customize your search and download e.g. a CVS file.

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written by Felix • Felix

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