I wanted to know if there is a simple way to filter variants from my WGS VCF to variants only found within runs of homozygosity file created from PLINK?
Hello everyone, I have tried to input a GVCF file in PLINK to detect Runs Of Homozygosity (ROH) using the following scripts: plink --vcf GVCF_SNPs_edit.vcf …
<p>Dear all, I have a .txt file (includes Chrom, Position, SnpId, Genotype) from Affymetrix Genotyper Console (Affymetrix SNP Array 6.0). Normally we put this into …