Bedtools fisher test error
I want to run the bedtools fisher command. For this I first sort my files using sort -k1,1 -k2,2n.
When I go to run the fisher test:
bedtools fisher -a a_sorted.txt -b b_sorted.txt -g rn6_chrom_sorted.txt
It says
exiting integer conversion of a string “282763074
What am I doing wrong? (The 282763074 is the length of chr 1 in my genome file).
1 answer
check you don't have any column with a blank character (space, crlf, ... ) near the word '282763074'.
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Pierre Lindenbaum
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