Trouble finding exons in DEXseq
Hello,
I am interested in determining differential exon usage from rna-seq data. To do this, I have been using STAR aligned data along with DEXseq. However, I am struggling to determine which exons are being differentially expressed.
DEXSeq seems to list far more exon/featureIDs for any given gene than there are exons. For example, the DMD gene has 133 exon/feature IDs according to DEXseq (from the flattened GFF file) while there are only 79 exons. Is there a way to just look at exons or determine which exon each featureID refers to?
Thank you in advance!
-Dan
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