Package for RNA-Protein Interaction Network
Is there an R or Python Package for RNA-Protein Interaction Network identification from scRNA-seq data?
scrna-seq
rna-seq
single-cell
• 769 views
•
link
updated
by
Ram
4.5K
• |
written
by
jvbeltran0122
1
0 answers
No answers yet.
Log in to answer this question.
More posts like this
-
Speed of Cell-Cell interaction analysis on scRNA-seq data
written by Song 1Hi all, i am trying to perform Cell-Cell interaction analysis on scRNA-seq data processed by Seurat. And I'm using Cellchat for analysis package, but it …
-
Making protein protein interaction figure
written by shahbaz.ahmed 4![protien-protein interaction data][1] Hello All, I have a protein-protein interaction dataset in the form of an excel file that was generated from an RNA-seq dataset …
-
Ask for help! Need a tutorial for processing Drop-seq data and converting sequencing data into expr…
written by lyxwyc777 0Recently, I am processing a series of single-cell RNA sequencing raw data generated by the Drop-Seq platform in the format of .sra files downloaded on …
-
Clustering of gene co-expression network using igraph R package
written by aiswaryabioinfo 3I have a gene co-expression network obtained from RNA-seq data which has more than 10000 nodes and more than 10 lakh edges. I need to …
-
Creating interaction network using cytoscape
written by piyushjo 71Hi, I have expression data from 65 patient. I am interested in creating protein-protein interaction network based on known interaction (STRINGdb) and expression (RNA-seq). My …
-
Where to download Protein-Protein Interaction Network with Cost values (Or Calculate)?
written by hkarakurt 21Hello everyone, I need to build a protein-protein interaction network (Mus musculus) with costs. Actually I will use this interaction network for PCSF package of …
-
Regulatory Network Inference from Single-cell RNAseq Data
written by whou 0Dear all, I am a postdoc with applied mathematics and bioinformatics background. I recently proceed to work on dynamic network inference from single-cell RNA-seq (scRNA-seq) …
-
Protein-protein interaction (PPI)
written by wonseongsik 5Hi all, I would like to draw protein-protein interaction (PPI) network based on my expression data (RNAseq). It would be great if I get some …
-
NGS protein-protein interaction network
written by Pappu 210I am tyring to build a protein-protein interaction network combining KEGG, RNA-seq and other NGS data for cancer and Alzheimer's. I am wondering if there …
-
Python alternative to Voom
written by fabio.ticconi 0<p>I have been using Voom (R package) to preprocess rna-seq data for linear modelling. Is there something similar in Python?</p>