Program to run analysis of 60,000 16S sequences?
Hello, I have a huge dataset with 60,000 16S sequences -- this total number will drop once redundant sequences are removed. Rather than building a phylogenetic tree, I am looking to run a phylogenetic analysis and ultimately plot the output. I do not care about the dataset's topology. I just want to be able to compare genetic distances between all 60,000 sequences in a PCoA-like format.
Any suggestions?
All the best, Peter
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